MmuEX6021143 @ mm9
Exon Skipping
Gene
ENSMUSG00000037936 | Scarb1
Description
scavenger receptor class B, member 1 [Source:MGI Symbol;Acc:MGI:893578]
Coordinates
chr5:125779003-125783593:-
Coord C1 exon
chr5:125783452-125783593
Coord A exon
chr5:125780707-125780910
Coord C2 exon
chr5:125779003-125779098
Length
204 bp
Sequences
Splice sites
3' ss Seq
CCATGTCCTTGGCTTTCCAGGGG
3' ss Score
8.7
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GGAGTTCAGACAAAAGGTCAACATCACCTTCAATGACAACGACACCGTGTCCTTCGTGGAGAACCGCAGCCTCCATTTCCAGCCTGACAAGTCGCATGGCTCAGAGAGTGACTACATTGTACTGCCTAACATCTTGGTCCTG
Seq A exon
GGGGGCTCGATATTGATGGAGAGCAAGCCTGTGAGCCTGAAGCTGATGATGACCTTGGCGCTGGTCACCATGGGCCAGCGTGCTTTTATGAACCGCACAGTTGGTGAGATCCTGTGGGGCTATGACGATCCCTTCGTGCATTTTCTCAACACGTACCTCCCAGACATGCTTCCCATAAAGGGCAAATTTGGCCTGTTTGTTGGG
Seq C2 exon
ATGAACAACTCGAATTCTGGGGTCTTCACTGTCTTCACGGGCGTCCAGAATTTCAGCAGGATCCATCTGGTGGACAAATGGAACGGACTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037936-'8-7,'8-6,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(10.4=100)
A:
PF0113016=CD36=FE(14.8=100)
C2:
PF0113016=CD36=FE(6.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCAACATCACCTTCAATGACA
R:
TGCTGAGTCCGTTCCATTTGT
Band lengths:
222-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: