DmeEX6022077 @ dm6
Exon Skipping
Gene
FBgn0260004 | Snmp1
Description
The gene Sensory neuron membrane protein 1 is referred to in FlyBase by the symbol DmelSnmp1 (CG7000, FBgn0260004). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (1 unique). Gene sequence location is 3R:21165167..21168205. Its molecular function is unknown. It is involved in the biological process described with 6 unique terms, many of which group under: cellular process; response to organic substance; response to chemical; response to stimulus; cellular response to chemical stimulus. 52 alleles are reported. The phenotypes of these alleles manifest in: adult olfactory receptor neuron Or67d; prothoracic gland; antennal intermediate sensillum I2; olfactory receptor neuron; lipid droplet. The phenotypic classes of alleles include: neurophysiology defective; viable; smell perception defective; lethal - all die before end of larval stage; fertile. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of no expression detected. Peak expression observed during late pupal stages, in adult male stages.
Coordinates
chr3R:21166311-21167733:-
Coord C1 exon
chr3R:21167586-21167733
Coord A exon
chr3R:21166886-21167140
Coord C2 exon
chr3R:21166311-21166817
Length
255 bp
Sequences
Splice sites
3' ss Seq
TCCCTTTCCAATTTTTACAGCCT
3' ss Score
8.76
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TGAGTGGAAGGACAAGTATGATTTGGAGGATGATGTCGTAGAGGACACGGTCAGCTTCACCATGAGGAACACGTTCATTTTCAACCCGAAGGAGTCGCTGCCACTTACGGGCGAGGAGGAGATTATTTTGCCGCATCCCATAATGCTG
Seq A exon
CCTGGCGGCATTTCGGTTCAAAGGGAAAAGGCTGCCATGATGGAGCTGGTTTCCAAAGGATTAAGCATTGTCTTTCCGGATGCCAAAGCCTTTTTGAAAGCTAAATTTATGGATTTATTTTTCCGCGGCATCAACGTAGATTGCTCCTCGGAAGAATTCTCCGCAAAGGCGCTCTGCACCGTGTTTTACACGGGAGAAATTAAGCAGGCCAAACAAGTCAATCAAACTCACTTTTTGTTCTCGTTTATGGGTCAG
Seq C2 exon
GCCAATCACTCGGATTCTGGCAGATTCACTGTCTGTCGCGGAGTGAAAAATAACAAAAAGCTTGGAAAGGTAGTGAAATTCGCCGACGAACCGGAGCAAGACATTTGGCCAGATGGCGAGTGCAACACCTTTGTGGGCACTGATTCTACGGTCTTTGCACCGGGCTTGAAAAAGGAGGATGGCCTGTGGGCATTCACGCCGGATTTGTGTAGATCCCTGGGCGCTTATTATCAGCACAAGTCATCCTACCATGGCATGCCATCGATGAGATACACCCTGGATTTGGGGGATATACGTGCCGATGAGAAGCTTCATTGTTTCTGCGAAGATCCCGAAGATCTGGACACGTGTCCGCCCAAGGGCACTATGAATCTGGCGGCCTGTGTTGGTGGTCCATTGATGGCATCAATGCCTCATTTCTATCTGGGCGATCCAAAGCTGGTTGCCGACGTTGATGGTCTCAATCCGAATGAAAAGGATCATGCGGTCTACATAGACTT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0260004-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(10.3=100)
A:
PF0113016=CD36=FE(17.7=100)
C2:
PF0113016=CD36=FE(35.4=100)
Main Inclusion Isoform:
FBpp0083430

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0306056
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGAGTCGCTGCCACTTAC
R:
GCTGATAATAAGCGCCCAGGG
Band lengths:
296-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)