BtaEX6072160 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014269 | SCARB1
Description
Bos taurus scavenger receptor class B, member 1 (SCARB1), mRNA. [Source:RefSeq mRNA;Acc:NM_174597]
Coordinates
chr17:53232537-53240426:+
Coord C1 exon
chr17:53232537-53232678
Coord A exon
chr17:53237720-53237923
Coord C2 exon
chr17:53240331-53240426
Length
204 bp
Sequences
Splice sites
3' ss Seq
GGTGTCCCCTGGCTCTGCAGAGT
3' ss Score
7.52
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGAGTTCAGGCACAAGAGCAACATCACCTTCAACAACAATGACACGGTGTCCTTCCTGGAGTACCGCAGCTACCAGTTCCAGCCGGATAAGTCCCGCGGCCAGGAGAGCGACTACATCGTCATGCCCAACATCCTGGTCTTG
Seq A exon
AGTGCGTCAATGATGATGGAGAACAGGCCCGGGCTCTTGAAGCTGATGATGACCTTGGCGTTCAGCACGCTTGGCCAGCGTGCCTTCATGAACCGCACTGTTGGCGAGATCATGTGGGGCTATGATGACCCCTTAATCCACCTCATCAATCAGTACTTCCCAAACTCGCTCCCCTTCAAGGGCAAGTTCGGCTTATTTGCTGAG
Seq C2 exon
CTCAACAACTCCGATTCTGGCCTCTTCACCGTGTTCACAGGGGTCAAAAACTTCAGCAGGATCCATCTCGTGGACAAGTGGAATGGAGTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014269-'10-7,'10-6,11-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(10.4=100)
A:
PF0113016=CD36=FE(14.8=100)
C2:
PF0113016=CD36=FE(6.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTTCAGGCACAAGAGCAA
R:
TGCTGACTCCATTCCACTTGT
Band lengths:
236-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]