RnoEX0078364 @ rn6
Exon Skipping
Gene
ENSRNOG00000000981 | Scarb1
Description
scavenger receptor class B, member 1 [Source:RGD Symbol;Acc:2302]
Coordinates
chr12:36736085-36740184:+
Coord C1 exon
chr12:36736085-36736226
Coord A exon
chr12:36738269-36738472
Coord C2 exon
chr12:36740089-36740184
Length
204 bp
Sequences
Splice sites
3' ss Seq
CCACATCCTTGGCTTTCCAGGGA
3' ss Score
7.55
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GGAGTTCAGACAAAAGGTTAACATCACCTTCAATGACAATGACACGGTGTCCTACATAGAGAACCGAAGCCTTCGTTTCCAGCCAGACAGGTCCCAGGGCTCAGAGAGTGACTACATTGTACTGCCTAACATCCTGGTCCTG
Seq A exon
GGAGGGGCAGTGATGATGGAGGACAAGCCCACAAGCCTGAAGCTGCTAATGACCTTGGGGTTGGTCACCATGGGCCAGCGGGCCTTTATGAACCGCACGGTTGGTGAGATCCTGTGGGGCTACGAAGATCCCTTTGTGAATTTCCTCAGCAAATATTTCCCAGACATGTTCCCCATCAAAGGCAAATTTGGCCTGTTCGTTGGG
Seq C2 exon
ATGAACGACTCGAGTTCTGGCGTCTTCACCGTCTTCACAGGTGTCCAGAATTTCAGCAAGATCCATCTGGTGGATAAGTGGAACGGCCTCAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000981_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(10.4=100)
A:
PF0113016=CD36=FE(14.8=100)
C2:
PF0113016=CD36=FE(6.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTTCAGACAAAAGGTTAACATCA
R:
CGCTGAGGCCGTTCCACTTAT
Band lengths:
236-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]