DreALTD0000760-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000101258 | COL27A1 (2 of 2)
Description
collagen, type XXVII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:22986]
Coordinates
chr16:51926230-51937448:+
Coord C1 exon
chr16:51926230-51926266
Coord A exon
chr16:51926267-51926274
Coord C2 exon
chr16:51937395-51937448
Length
8 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAAG
5' ss Score
6.84
3' ss Seq
TCTCTCTCTCTCTCTCTCAGGGT
3' ss Score
13.24
Exon sequences
Seq C1 exon
GGCAGTCCTGGTCCACCAGGGAAGAGGGGCAAGATGG
Seq A exon
GTAGGCCG
Seq C2 exon
GGTTTTCCTGGTGATTTCGGGGAGCGAGGGCCGCCAGGACTGGATGGGGAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101258-10-8,11-8-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGTCCTGGTCCACCA
R:
TGGTTCCCCATCCAGTCCTG
Band lengths:
91-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]