GgaALTD0002746-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000006958 | COL27A1
Description
NA
Coordinates
chr17:5341180-5350284:+
Coord C1 exon
chr17:5341180-5341216
Coord A exon
chr17:5341217-5341224
Coord C2 exon
chr17:5350231-5350284
Length
8 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAAG
5' ss Score
6.84
3' ss Seq
TCTAATATTTTCCTCCTCAGGGT
3' ss Score
10.18
Exon sequences
Seq C1 exon
GGGATCCCTGGAGTTCCTGGGAAGAGGGGCAAGATGG
Seq A exon
GTAGGCCG
Seq C2 exon
GGTTTTCCTGGTGATTTTGGGGAACGAGGACCTCCAGGCATCGACGGGAACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006958-21-20,22-20-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGTTCCTGGGAAGAGGG
R:
TGGGTTCCCGTCGATGCC
Band lengths:
84-92
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]