GgaALTD0002746-2/2 @ galGal4
Alternative 5'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NHH4]
Coordinates
chr17:4703449-4712553:+
Coord C1 exon
chr17:4703449-4703485
Coord A exon
chr17:4703486-4703493
Coord C2 exon
chr17:4712500-4712553
Length
8 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAAG
5' ss Score
6.84
3' ss Seq
TCTAATATTTTCCTCCTCAGGGT
3' ss Score
10.18
Exon sequences
Seq C1 exon
GGGATCCCTGGAGTTCCTGGGAAGAGGGGCAAGATGG
Seq A exon
GTAGGCCG
Seq C2 exon
GGTTTTCCTGGTGATTTTGGGGAACGAGGACCTCCAGGCATCGACGGGAACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006958-14-12,15-12-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGTTCCTGGGAAGAGGG
R:
TGGGTTCCCGTCGATGCC
Band lengths:
84-92
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]