DreALTD0021059-2/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000002168 | tra2b
Description
transformer 2 beta homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-1094]
Coordinates
chr9:12618736-12619478:-
Coord C1 exon
chr9:12619270-12619478
Coord A exon
chr9:12619229-12619269
Coord C2 exon
chr9:12618736-12618881
Length
41 bp
Sequences
Splice sites
5' ss Seq
TAAGTAACT
5' ss Score
1.43
3' ss Seq
CTGGGATGTGGTTGGTTTAGGAG
3' ss Score
3.58
Exon sequences
Seq C1 exon
GTTAAGGTTGGAAGAAGAGAAATCTGGATGAAGTCAAATGTCAAGTTGTTAATGCGAATAATTTGAAGCTGAATTTTCAGTGCATGCTAATATTGCGGAGCAAAAGAAGTTCCCATATAGCATTTTTGGGCAGTGAGAGAAATGGGGGAAGAGGATTGAAGTCAGAAATGAAATTGAGACTGAAGAAAGAAGAAAAGATGTGTTATGAA
Seq A exon
GTTAAGATCAGAAGTTATCTGGGATAAGATCGCAGCGCTAA
Seq C2 exon
GAGTCTCGTTCAGCCTCTAGGAGCGCAAGTCCTAGAGGATCTGCCAAGTCCGGCAGTCGCTCAGCTGAACGCTCGCCTGCTCATTCCAAAGAGAGGTCCCATCATTCCCGCTCAAAATCCCGCTCGCGCTCCCGTTCCAAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002168-1-3,2-3,3-3-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF131361=DUF3984=FE(51.6=100),PF086487=DUF1777=FE(43.6=100),PF072186=RAP1=FE(48.5=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSDART00000021266fB6781
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGCAGTGAGAGAAATGGG
R:
CCGGACTTGGCAGATCCTCTA
Band lengths:
137-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]