HsaALTD1021516-1/4 @ hg38
Alternative 5'ss
Gene
ENSG00000136527 | TRA2B
Description
transformer 2 beta homolog (Drosophila) [Source:HGNC Symbol;Acc:HGNC:10781]
Coordinates
chr3:185925464-185931618:-
Coord C1 exon
chr3:185931577-185931618
Coord A exon
NA
Coord C2 exon
chr3:185925464-185925626
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAAGTAATT
5' ss Score
1.76
3' ss Seq
AGGAGGTCTTTGTCTTGCAGGTC
3' ss Score
7.98
Exon sequences
Seq C1 exon
TTAAGATAAGAAGTAATCTGGAATCAGAAAGCACTACGCTAA
Seq A exon
NA
Seq C2 exon
GTCTAGATCCAGAAGAAGCTCCCGAAGGCATTATACCCGGTCACGGTCTCGCTCCCGCTCCCATAGACGATCACGTAGCAGGTCTTACAGTCGAGATTATCGTAGACGGCACAGCCACAGCCATTCTCCCATGTCTACTCGCAGGCGTCATGTTGGGAATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136527-11-17,13-17,14-17,15-17-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.292 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAATCAGAAAGCACTACGC
R:
CGATTCCCAACATGACGCCTG
Band lengths:
188-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains