GgaALTD0002586-3/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000006531 | TRA2B
Description
transformer-2 protein homolog beta [Source:RefSeq peptide;Acc:NP_990009]
Coordinates
chr9:3900517-3901183:+
Coord C1 exon
chr9:3900517-3900751
Coord A exon
chr9:3900752-3900794
Coord C2 exon
chr9:3901050-3901183
Length
43 bp
Sequences
Splice sites
5' ss Seq
TAAGTAATT
5' ss Score
1.76
3' ss Seq
CTTTCAATATCTGCGTGCAGGAA
3' ss Score
8.05
Exon sequences
Seq C1 exon
GTTAATGTTGAAGAAGGAAAATGCGGAAGTCGCCATTTGACAAGTTTTATAAATGAGAATTATTTGAAGCTCAGGAATAAGTGAAGCTGAAATTTGAAAAAAAAGAAAGTGAATGCATGCTAATTATCAGACCAGAAGTCCCACTTGTAGAATATTGAGCAATTTGTGTGAAGTGGGGAAGATGAAAGAAGTCAGAATTTGAAACGGAAGAATGAAGAAAAGGAATAAAAATGAA
Seq A exon
GTTAAGATAAGAAGTAATCTGGAATCTGAAAGCACTACGCTAA
Seq C2 exon
GAATCCCGTTCTGCTTCCAGAAGCGGAAGTGCTCATGGGTCTGGCAAGTCGGGGAGGCACACCCCTGCAAGATCTCGATCTAAGGAGGATTCAAGGCGTTCCAGGTCAAAATCTAGATCCAGGTCTGAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006531-7-4,8-4,9-4-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGAAGTGGGGAAGATGA
R:
GAGATCTTGCAGGGGTGTGC
Band lengths:
147-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]