RnoALTD0031719-2/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000001783 | Tra2b
Description
transformer 2 beta homolog [Source:RGD Symbol;Acc:619886]
Coordinates
chr11:82380321-82384569:+
Coord C1 exon
chr11:82380321-82380553
Coord A exon
chr11:82380554-82380596
Coord C2 exon
chr11:82384436-82384569
Length
43 bp
Sequences
Splice sites
5' ss Seq
TAAGTAATT
5' ss Score
1.76
3' ss Seq
CTTTTGACGTCTGCGTATAGGAA
3' ss Score
6.4
Exon sequences
Seq C1 exon
GTTAATGTTGAAGAAGGAAAATGCGGAAGTCGTCATTTGACAAGTTTTATAAATGAGTATTTGAAGCTCAGGAATAAGTGAAGCTGAAATTTGAAAAAATAAAAGAAAGAATGCATGCTAATTATCAGACCAGAAGTCCCACTTGTAGAATATTGAGCAATTTGTGTGAAGTGGGGAAGATGAAAGAAGTCAGAATTTGAAACGGAAGAATGAAGAAAAGAAATAAAAATGAA
Seq A exon
GTTAAGATAAGAAGTAATCTGGAATCAGAAAGCACTACGCTAA
Seq C2 exon
GAATCCCGTTCTGCTTCCCGAAGTGGAAGTGCTCATGGATCGGGGAAATCTGCACGGCACACACCTGCAAGGTCTCGCTCCAAGGAAGATTCAAGACGTTCTAGATCAAAGTCAAGATCCAGATCTGAATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001783-2-4,3-4,4-4,5-4-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAATTTGTGTGAAGTGGGGA
R:
GTGCAGATTTCCCCGATCCAT
Band lengths:
133-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]