GgaALTD0002586-3/3 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000006531 | Q9DDU8_CHICK
Description
NA
Coordinates
chr9:5429930-5430596:+
Coord C1 exon
chr9:5429930-5430164
Coord A exon
chr9:5430165-5430207
Coord C2 exon
chr9:5430463-5430596
Length
43 bp
Sequences
Splice sites
5' ss Seq
TAAGTAATT
5' ss Score
1.76
3' ss Seq
CTTTCAATATCTGCGTGCAGGAA
3' ss Score
8.05
Exon sequences
Seq C1 exon
GTTAATGTTGAAGAAGGAAAATGCGGAAGTCGCCATTTGACAAGTTTTATAAATGAGAATTATTTGAAGCTCAGGAATAAGTGAAGCTGAAATTTGAAAAAAAAGAAAGTGAATGCATGCTAATTATCAGACCAGAAGTCCCACTTGTAGAATATTGAGCAATTTGTGTGAAGTGGGGAAGATGAAAGAAGTCAGAATTTGAAACGGAAGAATGAAGAAAAGGAATAAAAATGAA
Seq A exon
GTTAAGATAAGAAGTAATCTGGAATCTGAAAGCACTACGCTAA
Seq C2 exon
GAATCCCGTTCTGCTTCCAGAAGCGGAAGTGCTCATGGGTCTGGCAAGTCGGGGAGGCACACCCCTGCAAGATCTCGATCTAAGGAGGATTCAAGGCGTTCCAGGTCAAAATCTAGATCCAGGTCTGAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006531-3-4,4-4,5-4-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGAAGTGGGGAAGATGA
R:
GAGATCTTGCAGGGGTGTGC
Band lengths:
147-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]