BtaALTD0022670-2/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000001697 | TRA2B
Description
Bos taurus transformer 2 beta homolog (Drosophila) (TRA2B), mRNA. [Source:RefSeq mRNA;Acc:NM_001034776]
Coordinates
chr1:81884999-81890273:+
Coord C1 exon
chr1:81884999-81885231
Coord A exon
chr1:81885232-81885274
Coord C2 exon
chr1:81890140-81890273
Length
43 bp
Sequences
Splice sites
5' ss Seq
TAAGTAATT
5' ss Score
1.76
3' ss Seq
CTTTTGACATCTACGTGTAGGAA
3' ss Score
6.3
Exon sequences
Seq C1 exon
GTTAATGTTGAAGAAGGAAAATGCGGAAGTCGTCATTTGACAAGTTTTATAAATGAGTATTTGAAGCTCAGGAATAAGTGAAGCTGAAATTTGAAAAAATAAAAGAAAGAATGCATGCTAATTATCAGACCAGAAGTCCCACTTGTAGAATATTGAGCAATTTGTGTGAAGTGGGGAAGATGAAAGAAGTCAGAATTTGAAACGGAAGAATGAAGAAAAGAAATAAAAATGAA
Seq A exon
GTTAAGATAAGAAGTAATCTGGAATCAGAAAGCACTACGCTAA
Seq C2 exon
GAATCCCGTTCTGCTTCCAGAAGTGGAAGTGCTCATGGATCTGGGAAATCTGCAAGGCATACCCCTGCAAGGTCTCGCTCCAAGGAAGATTCCAGGCGTTCCAGATCAAAGTCCAGGTCCAGATCTGAATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001697-1-4,2-4,3-4-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAATTTGTGTGAAGTGGGGA
R:
CAGGGGTATGCCTTGCAGATT
Band lengths:
145-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development