DreEX0003027 @ danRer10
Exon Skipping
Gene
ENSDARG00000031678 | COL5A2 (2 of 2)
Description
collagen, type V, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2210]
Coordinates
chr9:42857990-42858606:-
Coord C1 exon
chr9:42858553-42858606
Coord A exon
chr9:42858427-42858480
Coord C2 exon
chr9:42857990-42858097
Length
54 bp
Sequences
Splice sites
3' ss Seq
TAACATACCTCAATGTTTAGGGT
3' ss Score
6.13
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GGTAAACTTGGTGTTGCTGGACCAAAGGGTGGTAGAGGAACACAGGGGGCACCA
Seq A exon
GGTCCAACCGGGTTTCCTGGATCTGCTGGAAGGGTTGGCCCACCTGGTCCAACA
Seq C2 exon
GGACCTGACGGTCCACCCGGTCCTGCAGGAACAACAGGGCAAAGAGGAATTGTAGGCCTTCCTGGTCAAAGAGGAGAGCGTGGAATGGCAGGACTCCCTGGACCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031678_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTTGGTGTTGCTGGACCA
R:
CACGCTCTCCTCTTTGACCAG
Band lengths:
133-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]