MmuEX6024077 @ mm10
Exon Skipping
Gene
ENSMUSG00000026042 | Col5a2
Description
collagen, type V, alpha 2 [Source:MGI Symbol;Acc:MGI:88458]
Coordinates
chr1:45390032-45391715:-
Coord C1 exon
chr1:45391662-45391715
Coord A exon
chr1:45391076-45391129
Coord C2 exon
chr1:45390032-45390193
Length
54 bp
Sequences
Splice sites
3' ss Seq
AATGTATCTGTTGTTCCCAGGGT
3' ss Score
7.88
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGTCCACATGGTGTTCCTGGACTGAAAGGCGGTAGAGGAACCCAGGGTCCACCT
Seq A exon
GGTGCTACAGGGTTTCCTGGTTCTGCTGGCAGAGTTGGGCCTCCAGGCCCTGCT
Seq C2 exon
GGAGCTCCAGGACCTGCAGGGCCCGCAGGAGAACCTGGGAAGGAAGGACCTCCTGGTCTTCGTGGTGACCCTGGCTCTCATGGGCGAGTGGGAGATAGAGGACCAGCTGGCCCACCTGGTAGCCCAGGAGATAAAGGGGACCCAGGAGAAGATGGACAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026042-'60-59,'60-57,61-59
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.633
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(27.0=100)
A:
PF0139113=Collagen=FE(27.0=100)
C2:
PF0139113=Collagen=PU(38.6=59.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGGACTGAAAGGCGGTA
R:
TATCTCCCACTCGCCCATGAG
Band lengths:
138-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types