GgaEX1016864 @ galGal3
Exon Skipping
Gene
ENSGALG00000002509 | COL5A2
Description
NA
Coordinates
chr7:543724-545258:+
Coord C1 exon
chr7:543724-543777
Coord A exon
chr7:543963-544016
Coord C2 exon
chr7:545097-545258
Length
54 bp
Sequences
Splice sites
3' ss Seq
GATGTTGAAATATTTTTTAGGGT
3' ss Score
7.98
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGTCCTTCAGGTGTTCCTGGTCTGAAAGGTGGTCGAGGAACCCAGGGTCCCCCT
Seq A exon
GGTGCTACTGGATTCCCTGGATCTGCTGGAAGAGTTGGACCTCCTGGACCCACT
Seq C2 exon
GGAGCTCCAGGGCCTGCTGGGCCTATTGGTGAGCCAGGAAAAGAAGGTCCCCCAGGTCTTCGTGGTGATCCTGGTTCTCATGGTCGTGTGGGTGATCGAGGACCAGCTGGGCCCCCTGGTGGTCCTGGAGACAAGGGTGATGCAGGAGAAGATGGGCAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002509-'44-46,'44-45,45-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(19.8=100)
A:
PF0139113=Collagen=FE(19.8=100)
C2:
PF0139113=Collagen=PD(8.1=13.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTGAAAGGTGGTCGAGGA
R:
ATCACCCACACGACCATGAGA
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]