RnoEX6039579 @ rn6
Exon Skipping
Gene
ENSRNOG00000003736 | Col5a2
Description
collagen type V alpha 2 chain [Source:RGD Symbol;Acc:70921]
Coordinates
chr9:52106040-52107706:-
Coord C1 exon
chr9:52107653-52107706
Coord A exon
chr9:52107079-52107132
Coord C2 exon
chr9:52106040-52106201
Length
54 bp
Sequences
Splice sites
3' ss Seq
AATATGTCTGTTGTTCCCAGGGT
3' ss Score
8.06
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGTCCTCATGGTGTTCCTGGACTGAAAGGTGGTCGAGGAACCCAGGGTCCACCT
Seq A exon
GGTGCTACAGGATTTCCTGGTTCTGCTGGAAGAGTTGGGCCTCCAGGCCCCGCT
Seq C2 exon
GGAGCTCCAGGACCTGCAGGGCCCATAGGAGAACCTGGGAAGGAAGGACCACCCGGTCTTCGTGGGGACCCTGGCTCTCATGGGAGAGTGGGTGATAGAGGACCAGCTGGCCCACCTGGTAGCCCAGGAGACAAAGGGGACCCAGGGGAAGATGGACAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003736-'53-55,'53-54,54-55=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(25.8=100)
A:
PF0139113=Collagen=FE(25.8=100),PF0139113=Collagen=PU(8.1=27.8)
C2:
PF0139113=Collagen=PD(12.1=14.8),PF0139113=Collagen=FE(85.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAAGGTGGTCGAGGAACC
R:
GCTGGTCCTCTATCACCCACT
Band lengths:
140-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]