GgaEX1016864 @ galGal4
Exon Skipping
Gene
ENSGALG00000002509 | COL5A2
Description
collagen, type V, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2210]
Coordinates
chr7:536940-543036:+
Coord C1 exon
chr7:536940-536993
Coord A exon
chr7:539364-539417
Coord C2 exon
chr7:542983-543036
Length
54 bp
Sequences
Splice sites
3' ss Seq
GATGTTGAAATATTTTTTAGGGT
3' ss Score
7.98
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGTGAACCAGGTCCTCGAGGTCTTGTTGGTCCTCCCGGTTCTCGTGGAAACCCT
Seq A exon
GGTGCTACTGGATTCCCTGGATCTGCTGGAAGAGTTGGACCTCCTGGACCCACT
Seq C2 exon
GGTTCTCGAGGGCCAGTGGGTCCCCCAGGCCGTGCAGGAAAAAGAGGTTTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002509_MULTIEX1-4/9=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(6.7=27.8),PF0139113=Collagen=FE(20.0=100)
A:
PF0139113=Collagen=FE(19.8=100)
C2:
PF0139113=Collagen=PD(17.6=72.2),PF0139113=Collagen=FE(28.8=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAACCAGGTCCTCGAGG
R:
AGGCAAACCTCTTTTTCCTGCA
Band lengths:
108-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]