DreEX0007204 @ danRer10
Exon Skipping
Gene
ENSDARG00000077174 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr5:63607871-63610513:+
Coord C1 exon
chr5:63607871-63607971
Coord A exon
chr5:63610239-63610287
Coord C2 exon
chr5:63610408-63610513
Length
49 bp
Sequences
Splice sites
3' ss Seq
CTCCTCATTTCTTGTTTTAGTAT
3' ss Score
8.7
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
ACTGGGCGCAGGCCATTCGCATTGGAGTTGTGGATTGTGCTCATGAGAAGAACTTCGACATCTGTAAGGAGTTCGGGATCCACTTTTATCCCACCTTCAGG
Seq A exon
TATTTTAAGGCACATGACACCACAAATGACTTTGGAAAGACATATCAAG
Seq C2 exon
GAGCTGACAGAGAGCTTCAGACAGTCAGGCAGTTGATGGTGAACTTCATCCAGAACCACACTAGACAAGACTGGCCTGTGGGCTGCCCTCCGCTTCACCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077174-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=FE(29.2=100)
A:
PF0008515=Thioredoxin=FE(14.2=100)
C2:
PF0008515=Thioredoxin=PD(12.4=38.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATTCGCATTGGAGTTGTG
R:
TCACCATCAACTGCCTGACTG
Band lengths:
132-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]