RnoEX6015942 @ rn6
Exon Skipping
Gene
ENSRNOG00000018574 | Qsox2
Description
quiescin sulfhydryl oxidase 2 [Source:RGD Symbol;Acc:1584720]
Coordinates
chr3:3677930-3681345:-
Coord C1 exon
chr3:3681245-3681345
Coord A exon
chr3:3679048-3679096
Coord C2 exon
chr3:3677930-3678035
Length
49 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGTTTTTTCCTTTAGTAT
3' ss Score
10.3
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ACTGGGCTGCTGCCATCCGTGTCGCTGCTCTGGACTGTGCAGAAGAAAAGAACCAGGACGTGTGCCGCACATATGACATCCACTTCTACCCCACCTTCAGG
Seq A exon
TATTTTAGAGCATTTACAAAGGAGTTTACAACTGGAGAAAATTTTAAAG
Seq C2 exon
GACCTGACAGGGAGCTACGGACGGTCAGGCAGACAATGATCGACTTCCTGCAGAACCACACTGAGGGCTCCCGGCCTCCTGCATGCCCACCCCTGGATCCTATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018574-'4-3,'4-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=FE(30.0=100)
A:
PF0008515=Thioredoxin=FE(14.5=100)
C2:
PF0008515=Thioredoxin=PD(10.9=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCGCACATATGACATCCAC
R:
TGAATAGGATCCAGGGGTGGG
Band lengths:
145-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]