GgaEX1047586 @ galGal4
Exon Skipping
Gene
ENSGALG00000001758 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr17:8024454-8025822:+
Coord C1 exon
chr17:8024454-8024554
Coord A exon
chr17:8024775-8024823
Coord C2 exon
chr17:8025714-8025822
Length
49 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTCTTCCCCCTTAGTTC
3' ss Score
10.29
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ACTGGGAGTCTGCAATTAGAGTTGGTGTGCTGGACTGTGGGGAAGAAGAGAACTATGAGACGTGTAAGGAGTATGGGATCCACTTCTATCCAACTTTTAGG
Seq A exon
TTCTTCAAAGCGTTTACAAAGCAGTTTACAACTGGAGAAAATTACAAAG
Seq C2 exon
CAGGAGCCGATCGTGAGCTGCAAACAGTTCGCCAGATGATGATTGACTTCTTGCAGAACCATTCCCAAGAGTCAAAACCTCCAGCTTGCCCACCATTGGATCCAGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001758-'4-3,'4-1,5-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.054
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=FE(30.3=100)
A:
PF0008515=Thioredoxin=FE(14.7=100)
C2:
PF0008515=Thioredoxin=PD(10.1=29.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGACTGTGGGGAAGAAGA
R:
ACTCTTGGGAATGGTTCTGCA
Band lengths:
145-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]