HsaEX0051495 @ hg38
Exon Skipping
Gene
ENSG00000165661 | QSOX2
Description
quiescin sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr9:136224007-136226874:-
Coord C1 exon
chr9:136226774-136226874
Coord A exon
chr9:136224861-136224909
Coord C2 exon
chr9:136224007-136224112
Length
49 bp
Sequences
Splice sites
3' ss Seq
TTCTGTGTTTTTCCTCTTAGTAT
3' ss Score
9.11
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ACTGGGCCAGTGCCATTCGCGTCGCAGCTCTGGACTGCATGGAAGAGAAGAACCAGGCCGTGTGCCATGACTACGACATCCACTTCTACCCCACCTTCCGG
Seq A exon
TATTTTAAAGCATTTACAAAGGAGTTTACAACTGGAGAAAATTTTAAAG
Seq C2 exon
GACCTGACCGAGAGCTGCGAACAGTCAGACAGACGATGATTGACTTCCTGCAGAACCACACGGAAGGAAGCCGGCCCCCTGCCTGCCCGCGCCTAGACCCCATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165661-'5-8,'5-5,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.212
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=FE(29.7=100)
A:
PF0008515=Thioredoxin=FE(14.4=100)
C2:
PF0008515=Thioredoxin=PD(10.8=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCTGGACTGCATGGAAG
R:
CGTGTGGTTCTGCAGGAAGTC
Band lengths:
139-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development