GgaEX1047586 @ galGal3
Exon Skipping
Gene
ENSGALG00000001758 | QSOX2
Description
NA
Coordinates
chr17:8714767-8716135:+
Coord C1 exon
chr17:8714767-8714867
Coord A exon
chr17:8715088-8715136
Coord C2 exon
chr17:8716030-8716135
Length
49 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTCTTCCCCCTTAGTTC
3' ss Score
10.29
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ACTGGGAGTCTGCAATTAGAGTTGGTGTGCTGGACTGTGGGGAAGAAGAGAACTATGAGACGTGTAAGGAGTATGGGATCCACTTCTATCCAACTTTTAGG
Seq A exon
TTCTTCAAAGCGTTTACAAAGCAGTTTACAACTGGAGAAAATTACAAAG
Seq C2 exon
GAGCCGATCGTGAGCTGCAAACAGTTCGCCAGATGATGATTGACTTCTTGCAGAACCATTCCCAAGAGTCAAAACCTCCAGCTTGCCCACCATTGGATCCAGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001758-'3-3,'3-1,4-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=FE(29.5=100)
A:
PF0008515=Thioredoxin=FE(14.3=100)
C2:
PF0008515=Thioredoxin=PD(12.5=38.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGACTGTGGGGAAGAAGA
R:
ACTCTTGGGAATGGTTCTGCA
Band lengths:
142-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]