MmuEX0038179 @ mm10
Exon Skipping
Gene
ENSMUSG00000036327 | Qsox2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:MGI Symbol;Acc:MGI:2387194]
Coordinates
chr2:26225149-26228447:-
Coord C1 exon
chr2:26228347-26228447
Coord A exon
chr2:26226238-26226286
Coord C2 exon
chr2:26225149-26225254
Length
49 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTGTTTTTCCTTTAGTAT
3' ss Score
9.43
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ACTGGGCTGCTGCCATCCGTGTTGCTGCTCTGGACTGTGCAGAAGAAAAGAACCAGGATGTGTGCCGCACATATGACATCCACTTCTACCCCACCTTCAGG
Seq A exon
TATTTTAAAGCATTTACAAAGGAGTTTACAACGGGAGAAAATTTTAAAG
Seq C2 exon
GACCTGACAGGGAGCTGCGGACAGTCAGGCAGACAATGATCGACTTCCTGCAGAACCATACTGAGGGCACCTGGCCTCCTGCATGCCCACCCCTGGACCCTATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036327-'5-4,'5-2,7-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
PF0008515=Thioredoxin=FE(30.0=100)
A:
PF0008515=Thioredoxin=FE(14.5=100)
C2:
PF0008515=Thioredoxin=PD(10.9=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCTGGACTGTGCAGAAGA
R:
GTGCCCTCAGTATGGTTCTGC
Band lengths:
146-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types