DreEX0007403 @ danRer10
Exon Skipping
Gene
ENSDARG00000103823 | RBMS1 (2 of 2)
Description
RNA binding motif, single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907]
Coordinates
chr9:52198020-52223775:+
Coord C1 exon
chr9:52198020-52198078
Coord A exon
chr9:52207443-52207534
Coord C2 exon
chr9:52223618-52223775
Length
92 bp
Sequences
Splice sites
3' ss Seq
TGCGCTTGTCTTTCTGTCAGGTT
3' ss Score
9.59
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTATGGAAAAATTGTATCAACCAAGGCCATCTTAGACAAAACCACAAACAAATGCAAAG
Seq A exon
GTTACGGTTTCGTGGATTTCGACAGTCCTGCAGCGGCTCAAAAAGCAGTCAGTGCTCTGAAGACCAGCGGCGTTCAGGCCCAGATGGCCAAG
Seq C2 exon
CAACAAGAGCAGGACCCGACTAACCTGTACATCTCTAACCTGCCGTTAACCATGGATGAGCAGGAGTTGGAGGCCATGCTGAAGCCCTTCGGTCAGGTCGTCTCCACACGAATACTCCGAGACACCAACGGGGCCAGTCGAGGGGTCGGATTCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103823_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.355 C2=0.189
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(29.4=100)
A:
PF0007617=RRM_1=PD(39.7=87.1)
C2:
PF0007617=RRM_1=PU(66.7=83.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACCAAGGCCATCTTAGACA
R:
CCCGTTGGTGTCTCGGAGTAT
Band lengths:
175-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]