DreEX0008932 @ danRer10
Exon Skipping
Gene
ENSDARG00000078362 | TNC (2 of 2)
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr5:5215683-5222057:-
Coord C1 exon
chr5:5221896-5222057
Coord A exon
chr5:5219624-5219787
Coord C2 exon
chr5:5215683-5216416
Length
164 bp
Sequences
Splice sites
3' ss Seq
GTGCGTGTGCGTATGTTTAGGCG
3' ss Score
5.38
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GACTGTCAAATCTGCACAAAATCACAGCGGCCAAGCAGTATGAGATCCGCGTGGACTTGCGTGATGGATCTGAGACCGTTTTTGCCGTCTATGACAGATTTTACATCGGAGATCCTCGTTCCCGCTACAAGATCCAGATCGGTGCATACAGTGGAACTGCAG
Seq A exon
GCGACTCTCTGACGTATCACCAGAACAGGCCGTTCTCCACCTATGACAGTGACAATGACATCGCCATCACCAACTGTGCCCTCTCATACAAAGGCGCTTTCTGGTATAAAAACTGCCATCGAGTCAATCTGATGGGCAAATATGGAGACAGCAGCCACAGCAAA
Seq C2 exon
GGCATCAATTGGTTTCACTGGAAAGGCCACGAACATTCGATTCCCTTTGCGGAGATGAAGATCCGACCAGCAAATTTCAGAAACTTAGAAGGCAGACGAAAAAGATCCTAAACTTCAGATGGCCCTCTTTCTGTTTTCTCAAAAGTCCTTCTAGAGATACAAACTCTGCCTTCCACGTCAATGGTATTGATACTGTCATCAAACCGGTTAACATCTTAGAAACAGGTTTTCGACATTAAACAATGTGATTTTTGAAAGTCAAACACGAGATCTTCCTATTACAAACCTCAGATCTGTGAGAAAACCACTATAAGAACAAGTCTCCATTTTATTTGATGATCTTGTACAGGAAGAGATTTTTGACTCCAGTGATGTCATTTCCTCCACTGAATCACTGTCATGCTCAGGTCTGACACAACCAAGATGGTGCACATAAGCGTTCATTATTTTTTCCCTGGCATTTCTTTTAAACCTAAGAAATTAAGCAAATTATGATGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078362-'31-31,'31-29,33-31
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.194
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(25.7=100)
A:
PF0014713=Fibrinogen_C=FE(25.7=100)
C2:
PF0014713=Fibrinogen_C=PD(11.0=62.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATCCTCGTTCCCGCTACA
R:
AATACCATTGACGTGGAAGGCA
Band lengths:
242-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]