DreEX0009897 @ danRer10
Exon Skipping
Gene
ENSDARG00000079009 | abca1b
Description
ATP-binding cassette, sub-family A (ABC1), member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-9826]
Coordinates
chr14:6187519-6194055:+
Coord C1 exon
chr14:6187519-6187634
Coord A exon
chr14:6193675-6193819
Coord C2 exon
chr14:6193932-6194055
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTCATCTCGTCTCTCCTCAGATG
3' ss Score
11.42
5' ss Seq
CATGTAAGA
5' ss Score
5.58
Exon sequences
Seq C1 exon
TGCAATTATGTTGTTCCTGCCACTCTGGTGATCCTGATCTTTGTGTGCTTTCAACAAAAAGCCTACGTTTCCGCCACCAACCTGCCTGTTCTTGCCCTGCTTCTGCTTCTATATGG
Seq A exon
ATGGTCCATCACTCCTCTTATGTACCCAGCATCCTTCCTCTTTAAAATCCCCAGCACTGCTTATGTGGTTCTCACAAGCGTCAACATCCTCATTGGGATCAATGGCAGCATTTCAACATTTGTCATGGAGTTATTCGGAAATCAT
Seq C2 exon
GAAATTGGAGGAATTAATGACATCCTGAAGAACGTTTTGCTCATCTTCCCACATTTCTGCCTGGGTCGAGGTCTCATCGACATGGTGAAGAATCAGGCCATGGCTGACGCTCTGGAGAGATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079009-'42-48,'42-45,43-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(11.7=100)
A:
PF126982=ABC2_membrane_3=FE(14.8=100)
C2:
PF126982=ABC2_membrane_3=FE(12.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGTTGTTCCTGCCACTCTGG
R:
CAAATCTCTCCAGAGCGTCAGC
Band lengths:
234-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]