GgaEX6050614 @ galGal4
Exon Skipping
Gene
ENSGALG00000015433 | ABCA1
Description
ATP-binding cassette sub-family A member 1 [Source:RefSeq peptide;Acc:NP_989476]
Coordinates
chrZ:54555257-54556968:-
Coord C1 exon
chrZ:54556853-54556968
Coord A exon
chrZ:54556621-54556765
Coord C2 exon
chrZ:54555257-54555380
Length
145 bp
Sequences
Splice sites
3' ss Seq
TGTGGCCTTTCATCTTGCAGTTG
3' ss Score
11.32
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
TGCAACTACATCGTTCCAGCCACACTCGTCATCATCATCTTCATCTGCTTCCAACAGAAGTCCTATGTATCCTCCTCCAACTTGCCTGTGCTCGCTCTTCTTCTGCTTCTCTATGG
Seq A exon
TTGGTCTATCACTCCTCTCATGTATCCAGCCTCCTTCGTGTTCAAAATCCCCAGCACAGCATATGTTGTGCTGACCAGTGTGAACCTCTTCATTGGCATCAATGGTAGTGTAGCCACCTTTGTCCTGGAGCTCTTCACCAACAAC
Seq C2 exon
AAGCTGAACAACATCAATGACATCTTGAAGTCTGTCTTTCTTATCTTCCCTCACTTCTGCCTGGGGCGGGGTCTTATTGACATGGTGAAAAATCAGGCCATGGCTGATGCTCTGGAGAGGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-'52-72,'52-68,53-72=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(10.4=100)
A:
PF126982=ABC2_membrane_3=FE(13.1=100)
C2:
PF126982=ABC2_membrane_3=FE(11.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACTACATCGTTCCAGCCA
R:
CTCTCCAGAGCATCAGCCATG
Band lengths:
234-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]