GgaEX6050614 @ galGal3
Exon Skipping
Gene
ENSGALG00000015433 | E1C619_CHICK
Description
NA
Coordinates
chrZ:53606740-53608664:-
Coord C1 exon
chrZ:53608549-53608664
Coord A exon
chrZ:53608317-53608461
Coord C2 exon
chrZ:53606740-53607019
Length
145 bp
Sequences
Splice sites
3' ss Seq
TGTGGCCTTTCATCTTGCAGTTG
3' ss Score
11.32
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
TGCAACTACATCGTTCCAGCCACACTCGTCATCATCATCTTCATCTGCTTCCAACAGAAGTCCTATGTATCCTCCTCCAACTTGCCTGTGCTCGCTCTTCTTCTGCTTCTCTATGG
Seq A exon
TTGGTCTATCACTCCTCTCATGTATCCAGCCTCCTTCGTGTTCAAAATCCCCAGCACAGCATATGTTGTGCTGACCAGTGTGAACCTCTTCATTGGCATCAATGGTAGTGTAGCCACCTTTGTCCTGGAGCTCTTCACCAACAAC
Seq C2 exon
AAGCTGAACAACATCAATGACATCTTGAAGTCTGTCTTTCTTATCTTCCCTCACTTCTGCCTGGGGCGGGGTCTTATTGACATGGTGAAAAATCAGGCCATGGCTGATGCTCTGGAGAGGTTTGGTAAGTGCAATTGTGCGGTCCTGCTCTGGATTAACACCCTTGTTCTTCTGACTTTTCAGGAGTTCAGAGTACACAGTTTGCAGCACAGAGCTTATCAGAGTTGGCAGGTATCCTCAGCTGCCCTCTTCAGGCTGTTTCAAACACCAAAGAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-'48-65,'48-61,49-65=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(10.0=100)
A:
PF126982=ABC2_membrane_3=FE(12.6=100)
C2:
PF126982=ABC2_membrane_3=PD(16.7=62.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGCTCGCTCTTCTTCTG
R:
GCTCTGTGCTGCAAACTGTGT
Band lengths:
247-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]