RnoEX6021854 @ rn6
Exon Skipping
Gene
ENSRNOG00000018126 | Abca1
Description
ATP binding cassette subfamily A member 1 [Source:RGD Symbol;Acc:631344]
Coordinates
chr5:69871421-69873422:-
Coord C1 exon
chr5:69873307-69873422
Coord A exon
chr5:69873053-69873197
Coord C2 exon
chr5:69871421-69871544
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTATGTTTGTGCCTTCCCAGGTG
3' ss Score
9.94
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
TGTAATTATGTGGTCCCTGCTACACTGGTCGTTATCATCTTCATCTGCTTCCAGCAGAAGTCCTATGTATCCTCCACCAACCTGCCTGTTCTAGCCCTTCTGCTCTTGCTATATGG
Seq A exon
GTGGTCGATCACTCCTCTCATGTACCCAGCGTCCTTTGTGTTCAAGATCCCCAGCACTGCCTACGTGGTCCTCACCAGTGTGAACCTCTTCATCGGCATCAATGGTAGTGTGGCCACTTTCGTCCTGGAGCTCTTTACAAACAAT
Seq C2 exon
AAATTCAATGACATCAATGACATCCTGAAATCTGTGTTTCTTATTTTCCCACATTTTTGCCTGGGGCGAGGGCTTATTGACATGGTGAAAAACCAGGCGATGGCTGATGCCCTGGAGAGGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018126-'52-51,'52-50,53-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(7.2=100)
A:
PF126982=ABC2_membrane_3=FE(9.1=100)
C2:
PF126982=ABC2_membrane_3=FE(7.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGTGGTCCCTGCTACACTGG
R:
CAAACCTCTCCAGGGCATCAG
Band lengths:
234-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]