DreEX0010605 @ danRer10
Exon Skipping
Gene
ENSDARG00000039456 | acbd6
Description
acyl-CoA binding domain containing 6 [Source:ZFIN;Acc:ZDB-GENE-030131-2810]
Coordinates
chr8:14350700-14367719:+
Coord C1 exon
chr8:14350700-14350782
Coord A exon
chr8:14357149-14357254
Coord C2 exon
chr8:14367630-14367719
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTTGTTGTGTTTGACTTTAGGGA
3' ss Score
9.21
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
TCTTCAGAGCGACGAGGAGGAGAAAAGCGAACTGGATTCGGTGGGCCAGCGGTTAGCTCTCTATACCAAGAGGAAAAGATAAG
Seq A exon
GGAAGAGGACAAAAACATTTTCGACTACTGTCGAGAGAACAACATCGAACACGTCAGCAAGGCCATCAGCTCCAAGACAGTGGACGTAAACACAAGAGACGAAGAG
Seq C2 exon
GGCCGAGCTCTCCTGCACTGGGCGTGTGACAGGGGCCATAAAGACCTGGTGTCTCTTCTCCTGCAAAATAATGCTGATATCAATAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039456_MULTIEX1-2/4=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.464 A=0.250 C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(30.1=77.8)
C2:
PF127962=Ank_2=FE(31.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGAGCGACGAGGAGGAG
R:
TGATATCAGCATTATTTTGCAGGAGA
Band lengths:
164-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]