GgaEX1005872 @ galGal4
Exon Skipping
Gene
ENSGALG00000003924 | ACBD6
Description
acyl-CoA-binding domain-containing protein 6 [Source:RefSeq peptide;Acc:NP_001264476]
Coordinates
chr8:5910556-5925813:+
Coord C1 exon
chr8:5910556-5910638
Coord A exon
chr8:5920352-5920457
Coord C2 exon
chr8:5925724-5925813
Length
106 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTGTTTCCCAAATAGAGA
3' ss Score
7.1
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
ACAACAGAGAAGAGGGGGAAAGAAAGCAAAACTGCATTTGGAGGCCCGGTTGTCAGCTCGTTGTATCAAGAAGAAACAATCAG
Seq A exon
AGAAGAGGACAAGAACATTTTTGATTACTGCAGAGAAAACAACATTGACTACGTAACCAAAGCCATTCAATCGAAAAAAGTGGACGTGAATGTCGCAGATGAGGAG
Seq C2 exon
GGCAGGGCTCTGCTCCACTGGGCATGCGACAGAGGACACAAGGAGCTCGTTTCAGTACTGTTGCAACACGCTGCCGATGTTAACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003924_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=0.042 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(23.7=100)
A:
PF127962=Ank_2=FE(30.7=100)
C2:
PF127962=Ank_2=FE(25.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACAGAGAAGAGGGGGAAAGA
R:
CTGGCTGTTAACATCGGCAGC
Band lengths:
173-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]