HsaEX0001844 @ hg19
Exon Skipping
Gene
ENSG00000135847 | ACBD6
Description
acyl-CoA binding domain containing 6 [Source:HGNC Symbol;Acc:23339]
Coordinates
chr1:180366651-180399397:-
Coord C1 exon
chr1:180399315-180399397
Coord A exon
chr1:180382501-180382606
Coord C2 exon
chr1:180366651-180366740
Length
106 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTTTTTTATTCTAGGGA
3' ss Score
11.8
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATACCAGAGAAGAAAGGAAAAGAAGCAAATACAGGTTTTGGTGGGCCAGTTATTAGTTCTCTATATCATGAAGAAACCATCAG
Seq A exon
GGAAGAAGACAAAAATATATTTGATTACTGCAGGGAAAACAACATTGACCATATAACCAAAGCCATCAAATCGAAAAATGTGGATGTGAATGTGAAAGATGAAGAG
Seq C2 exon
GGTAGGGCTCTACTTCACTGGGCCTGTGATCGAGGACATAAGGAACTAGTCACAGTGTTGCTGCAACATAGAGCTGACATTAACTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135847-'4-9,'4-5,6-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.339 A=0.007 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(30.1=77.8)
C2:
PF127962=Ank_2=FE(31.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACCAGAGAAGAAAGGAAAAGAAGC
R:
ACAGTTAATGTCAGCTCTATGTTGCA
Band lengths:
170-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)