GgaEX1005872 @ galGal3
Exon Skipping
Gene
ENSGALG00000003924 | ACBD6
Description
NA
Coordinates
chr8:6239782-6255039:+
Coord C1 exon
chr8:6239782-6239864
Coord A exon
chr8:6249578-6249683
Coord C2 exon
chr8:6254950-6255039
Length
106 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTGTTTCCCAAATAGAGA
3' ss Score
7.1
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
ACAACAGAGAAGAGGGGGAAAGAAAGCAAAACTGCATTTGGAGGCCCGGTTGTCAGCTCGTTGTATCAAGAAGAAACAATCAG
Seq A exon
AGAAGAGGACAAGAACATTTTTGATTACTGCAGAGAAAACAACATTGACTACGTAACCAAAGCCATTCAATCGAAAAAAGTGGACGTGAATGTCGCAGATGAGGAG
Seq C2 exon
GGCAGGGCTCTGCTCCACTGGGCATGCGACAGAGGACACAAGGAGCTCGTTTCAGTACTGTTGCAACACGCTGCCGATGTTAACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003924-'6-11,'6-10,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(30.1=77.8)
C2:
PF127962=Ank_2=FE(31.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACAGAGAAGAGGGGGAAAGA
R:
CTGGCTGTTAACATCGGCAGC
Band lengths:
173-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]