MmuEX0003426 @ mm10
Exon Skipping
Gene
ENSMUSG00000033701 | Acbd6
Description
acyl-Coenzyme A binding domain containing 6 [Source:MGI Symbol;Acc:MGI:1919732]
Coordinates
chr1:155601454-155624958:+
Coord C1 exon
chr1:155601454-155601536
Coord A exon
chr1:155615867-155615972
Coord C2 exon
chr1:155624869-155624958
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTAACTCTAATTAGGGA
3' ss Score
8.19
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
GTATCAGAGAAGAAGGGAAAAGAAGGCAGTAGTGGTTTCGGTGGTCCGGTTGTTAGTTCTCTATATCATGAAGAAACAATCAG
Seq A exon
GGAAGAAGACAAAAACATATTTGATTACTGCAGGGAAAACAACATTGACCATATAGCCAAAGCCATCAAATCGAAAGCTGCGGATGTGAATATGACAGATGAAGAG
Seq C2 exon
GGCAGAGCTCTGCTCCACTGGGCATGTGACCGAGGACATAAGGAACTGGTGAAAGTCTTGCTACAGTATGAAGCTGGCATTAATTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033701_MULTIEX1-2/4=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.321 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(30.1=77.8)
C2:
PF127962=Ank_2=FE(31.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGAAGAAGGGAAAAGAAGGC
R:
CTGACAATTAATGCCAGCTTCA
Band lengths:
170-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types