RnoEX0005853 @ rn6
Exon Skipping
Gene
ENSRNOG00000003550 | Acbd6
Description
acyl-CoA binding domain containing 6 [Source:RGD Symbol;Acc:1305030]
Coordinates
chr13:73239822-73265813:+
Coord C1 exon
chr13:73239822-73239904
Coord A exon
chr13:73255237-73255342
Coord C2 exon
chr13:73265724-73265813
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTACTCTAATTAGGGA
3' ss Score
8.55
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
GTGTCAGAGAAGAAAGGAAAAGAAGGCAGTAGTGGGTTTGGTGGTCCAGTCGTTAGTTCTCTGTATCATGAAGAAACAATCAG
Seq A exon
GGAAGAAGACAAAAACATATTTGATTACTGCAGGGAAAACAACATTGACCACATAACCAAAGCCATCAAATCGAAAACTGTGGATGTGAATATGACAGATGAAGAG
Seq C2 exon
GGCAGAGCTCTGCTCCACTGGGCATGCGATCGAGGACATAAGGAGCTGGTGAAAGTCTTGCTACAGTGTGAAGCCGGCATTAATTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003550_MULTIEX1-3/5=2-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.237 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(30.1=77.8)
C2:
PF127962=Ank_2=FE(31.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGAAGAAAGGAAAAGAAGGCA
R:
CTGACAATTAATGCCGGCTTCAC
Band lengths:
170-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]