DreEX0010842 @ danRer10
Exon Skipping
Gene
ENSDARG00000010752 | acsl4b
Description
acyl-CoA synthetase long-chain family member 4b [Source:ZFIN;Acc:ZDB-GENE-030131-6493]
Coordinates
chr5:23018142-23019779:-
Coord C1 exon
chr5:23019585-23019779
Coord A exon
chr5:23019380-23019494
Coord C2 exon
chr5:23018142-23018299
Length
115 bp
Sequences
Splice sites
3' ss Seq
TGATACACTTCTGCTCTCAGATC
3' ss Score
8.53
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGGATACACCAGCCAGGACAAGCCTCACCCAAGAGGGGAGATTTTGATTGGTGGACCAAATGTTGCCATGGGATACTATGGGAGTGAGGGGGAGGGGCAAAATGACAATTTCTGGGTTGACGAAGCGGGCCAGCGCTGGTTCTCTACTGGAGACATTGGGGAGGTTCATCCAGATGGTTGTCTGGAAATTGTGG
Seq A exon
ATCGGAAGAAAGACCTGGTGAAGCTTCAGGCAGGTGAATATGTGTCTCTGGGGAAGGTTGAAGCTGCCATGAAAAACAGTCCCCTCATTGATAACATCTGCGTCTATGCTAGCAG
Seq C2 exon
TGACCAGAACTATGTGATCAGCTTTGTGGTGCCCAATCAGAAGAACTTGACAGAGTTGGCAAAAAAGAGTGGGATAGATGGCGAGTGGGATGACATTTGTAACCACACTATGATGGAGGAGGAGGTGCTGAAAGTCATCAAAGAGATTGCAGTTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010752_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(13.6=100)
A:
PF0050123=AMP-binding=PD(1.9=23.1),PF131931=AMP-binding_C=PU(20.6=51.3)
C2:
PF131931=AMP-binding_C=FE(54.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCAAATGTTGCCATGGGA
R:
ACAAATGTCATCCCACTCGCC
Band lengths:
242-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]