DreEX0010938 @ danRer10
Exon Skipping
Gene
ENSDARG00000071090 | actn2b
Description
actinin, alpha 2b [Source:ZFIN;Acc:ZDB-GENE-051127-39]
Coordinates
chr17:20105637-20107414:-
Coord C1 exon
chr17:20107235-20107414
Coord A exon
chr17:20106704-20106850
Coord C2 exon
chr17:20105637-20105702
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTTATTTCTTTCTTCTGCAGCAT
3' ss Score
10.43
5' ss Seq
CGGGTGCTG
5' ss Score
0.58
Exon sequences
Seq C1 exon
GAAATTGGTCATTGTTCTATGGCGATGGGCGGAACTCTGGAGGATCAGATGACCCAACTGAAGCAGTATGAGCATGTGATCGTCAGCTACAAATCCAACATAGACCGACTTGAGGGAGATCACCAACTCATTCAGGAGTCACTTATCTTTGACAACAAACACACTAACTACACTATGGAG
Seq A exon
CATGTTCGCGTTGGCTGGGAGCTCCTATTGACCACGATTGCTCGCACAATTAATGAAATCGAGACTCAAATTTTGACCCGTGATGCAAAAGGGATCAGCCAGGAGCAGATGCATGAGTTCCGGTCCTCTTTCAACCATTTTGATCGG
Seq C2 exon
AAGAAGAACGGGGGCATGGATTCTGATGACTTTAGGGCCTGTCTGATCTCGATGGGTTATGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071090-'22-26,'22-21,23-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.014 C2=0.061
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(56.7=100),PF088696=XisI=PU(64.2=71.7)
A:
PF0043516=Spectrin=PD(20.2=42.9),PF088696=XisI=PD(31.8=42.9),PF134051=EF-hand_6=PU(33.3=20.4)
C2:
PF138331=EF-hand_8=PU(37.7=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTCATTGTTCTATGGCGA
R:
CAGATCATAACCCATCGAGATCAGAC
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]