MmuEX0003625 @ mm9
Exon Skipping
Gene
ENSMUSG00000052374 | Actn2
Description
actinin alpha 2 [Source:MGI Symbol;Acc:MGI:109192]
Coordinates
chr13:12364966-12368809:-
Coord C1 exon
chr13:12368630-12368809
Coord A exon
chr13:12367345-12367491
Coord C2 exon
chr13:12364966-12365031
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTGGTTCTTCTCCTTGGTAGCAT
3' ss Score
5.95
5' ss Seq
AGGGTACTG
5' ss Score
4.5
Exon sequences
Seq C1 exon
GAGATCGCTCGGAGCTCCATCCAGATCACCGGGGCCCTGGAGGACCAGATGAACCAGCTGAAGCAGTACGAACACAACATCATCAACTACAAGAACAACATCGACAAGCTGGAGGGCGACCACCAGCTCATCCAGGAGGCCCTGGTCTTCGACAACAAGCACACGAACTACACCATGGAG
Seq A exon
CATATCCGTGTCGGATGGGAGTTGCTGCTGACAACTATCGCCAGAACCATCAATGAGGTGGAGACCCAGATCCTGACAAGAGATGCCAAGGGCATCACCCAGGAGCAGATGAATGAGTTCAGAGCCTCCTTCAACCACTTTGACAGG
Seq C2 exon
AGGAAGAACGGCCTGATGGATCATGAGGATTTCAGAGCCTGCCTCATTTCCATGGGCTATGACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052374-'21-20,'21-19,22-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.183 A=0.000 C2=0.045
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(56.7=100),PF088696=XisI=PU(66.2=71.7)
A:
PF0043516=Spectrin=PD(20.2=42.9),PF088696=XisI=PD(30.8=40.8),PF138331=EF-hand_8=PU(15.4=20.4)
C2:
PF138331=EF-hand_8=FE(32.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCGCTCGGAGCTCCATC
R:
GTCATAGCCCATGGAAATGAGGC
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: