RnoEX0006349 @ rn6
Exon Skipping
Gene
ENSRNOG00000017833 | Actn2
Description
actinin alpha 2 [Source:RGD Symbol;Acc:1308097]
Coordinates
chr17:66307443-66311523:-
Coord C1 exon
chr17:66311269-66311523
Coord A exon
chr17:66309824-66309970
Coord C2 exon
chr17:66307443-66307508
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTGGTTCCTCTCCTTGACAGCAT
3' ss Score
7.97
5' ss Seq
AGGGTACTG
5' ss Score
4.5
Exon sequences
Seq C1 exon
GAGATCGCTCGGAGCTCCATCCAGATCACAGGGGCCCTGGAGGACCAGATGAACCAGCTGAAGCAGTACGAGCACAACATCATCAACTACAAGAACAACATTGACAAGCTGGAGGGCGACCACCAGCTCATCCAGGAAGCCCTGGTCTTCGACAACAAGCACACCAACTACACCATGGAGGTACGGATGGCGCGTGGGCAGGCTTGGCTCGCCTTGACCTTGCCGGTTGTTTCCGTCCGCACGTCTCCCTCTCTG
Seq A exon
CATATCCGTGTCGGATGGGAGTTGCTGCTCACAACTATCGCCAGAACCATCAATGAGGTGGAGACCCAGATCCTGACAAGAGATGCCAAGGGCATCACCCAGGAGCAGATGAATGAGTTCAGAGCCTCCTTCAACCACTTTGACAGG
Seq C2 exon
AGGAAGAATGGCCTGATGGATCATGAGGATTTCAGAGCCTGCCTCATTTCCATGGGCTATGACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017833-'28-31,'28-30,29-31
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.061 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(56.7=100)
A:
PF0043516=Spectrin=PD(20.2=42.9),PF138331=EF-hand_8=PU(15.4=20.4)
C2:
PF138331=EF-hand_8=FE(32.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAGCAGTACGAGCACAA
R:
AGGCAGGCTCTGAAATCCTCA
Band lengths:
243-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]