Special

MmuEX0003625 @ mm10

Exon Skipping

Gene
Description
actinin alpha 2 [Source:MGI Symbol;Acc:MGI:109192]
Coordinates
chr13:12272699-12276542:-
Coord C1 exon
chr13:12276363-12276542
Coord A exon
chr13:12275078-12275224
Coord C2 exon
chr13:12272699-12272764
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTGGTTCTTCTCCTTGGTAGCAT
3' ss Score
5.95
5' ss Seq
AGGGTACTG
5' ss Score
4.5
Exon sequences
Seq C1 exon
GAGATCGCTCGGAGCTCCATCCAGATCACCGGGGCCCTGGAGGACCAGATGAACCAGCTGAAGCAGTACGAACACAACATCATCAACTACAAGAACAACATCGACAAGCTGGAGGGCGACCACCAGCTCATCCAGGAGGCCCTGGTCTTCGACAACAAGCACACGAACTACACCATGGAG
Seq A exon
CATATCCGTGTCGGATGGGAGTTGCTGCTGACAACTATCGCCAGAACCATCAATGAGGTGGAGACCCAGATCCTGACAAGAGATGCCAAGGGCATCACCCAGGAGCAGATGAATGAGTTCAGAGCCTCCTTCAACCACTTTGACAGG
Seq C2 exon
AGGAAGAACGGCCTGATGGATCATGAGGATTTCAGAGCCTGCCTCATTTCCATGGGCTATGACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052374-'36-27,'36-25,37-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (disopred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0043516=Spectrin=FE(56.7=100)
A:
PF0043516=Spectrin=PD(20.2=42.9),PF138331=EF-hand_8=PU(15.4=20.4)
C2:
PF138331=EF-hand_8=FE(32.3=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCGCTCGGAGCTCCATC
R:
GTCATAGCCCATGGAAATGAGGC
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types