GgaEX6030118 @ galGal4
Exon Skipping
Gene
ENSGALG00000014463 | ACTN2
Description
Alpha-actinin-2 [Source:UniProtKB/Swiss-Prot;Acc:P20111]
Coordinates
chr3:36953275-36960299:-
Coord C1 exon
chr3:36960120-36960299
Coord A exon
chr3:36959038-36959184
Coord C2 exon
chr3:36953275-36953340
Length
147 bp
Sequences
Splice sites
3' ss Seq
CAGTATTTTCTCTCTCATAGCAT
3' ss Score
7.54
5' ss Seq
AGGGTACAG
5' ss Score
3.14
Exon sequences
Seq C1 exon
GAAATTGCCCGCAGCTCTATTGAAATGACAGGGCCTTTGGAGGACCAGATGAATCAGCTGAAGCAATATGAGCAAAATATCATTAACTATAAACACAACATTGATAAACTGGAAGGAGATCATCAGCTCATACAAGAAGCCTTGGTGTTTGACAACAAACACACCAACTATACTATGGAG
Seq A exon
CATATCCGTGTTGGATGGGAGCTCCTACTTACTACCATTGCTCGAACTATCAATGAGGTTGAGACTCAGATCCTCACAAGAGATGCCAAGGGTATCACCCAGGAGCAAATGAATGACTTCAGAGCATCATTCAATCATTTTGACAGG
Seq C2 exon
AGGAAGAACGGACTGATGGACCATGATGATTTCAGAGCTTGCTTGATTTCAATGGGTTATGATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014463-'38-37,'38-33,39-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.010 C2=0.074
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(58.4=100)
A:
PF0043516=Spectrin=PD(20.8=42.9)
C2:
PF138331=EF-hand_8=PU(37.7=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATTGCCCGCAGCTCTATTG
R:
TCATAACCCATTGAAATCAAGCAAGC
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]