GgaEX6030118 @ galGal3
Exon Skipping
Gene
ENSGALG00000014463 | ACTN2_CHICK
Description
NA
Coordinates
chr3:39116833-39123857:-
Coord C1 exon
chr3:39123678-39123857
Coord A exon
chr3:39122596-39122742
Coord C2 exon
chr3:39116833-39116898
Length
147 bp
Sequences
Splice sites
3' ss Seq
CAGTATTTTCTCTCTCATAGCAT
3' ss Score
7.54
5' ss Seq
AGGGTACAG
5' ss Score
3.14
Exon sequences
Seq C1 exon
GAAATTGCCCGCAGCTCTATTGAAATGACAGGGCCTTTGGAGGACCAGATGAATCAGCTGAAGCAATATGAGCAAAATATCATTAACTATAAACACAACATTGATAAACTGGAAGGAGATCATCAGCTCATACAAGAAGCCTTGGTGTTTGACAACAAACACACCAACTATACTATGGAG
Seq A exon
CATATCCGTGTTGGATGGGAGCTCCTACTTACTACCATTGCTCGAACTATCAATGAGGTTGAGACTCAGATCCTCACAAGAGATGCCAAGGGTATCACCCAGGAGCAAATGAATGACTTCAGAGCATCATTCAATCATTTTGACAGG
Seq C2 exon
AGGAAGAACGGACTGATGGACCATGATGATTTCAGAGCTTGCTTGATTTCAATGGGTTATGATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014463-'21-21,'21-20,22-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.467 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(56.7=100)
A:
PF0043516=Spectrin=PD(20.2=42.9)
C2:
PF138331=EF-hand_8=PU(37.7=90.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATTGCCCGCAGCTCTATTG
R:
TCATAACCCATTGAAATCAAGCAAGC
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]