DreEX0010952 @ danRer10
Exon Skipping
Gene
ENSDARG00000013755 | actn3a
Description
actinin alpha 3a [Source:ZFIN;Acc:ZDB-GENE-000329-9]
Coordinates
chr21:27363183-27363644:+
Coord C1 exon
chr21:27363183-27363264
Coord A exon
chr21:27363355-27363440
Coord C2 exon
chr21:27363552-27363644
Length
86 bp
Sequences
Splice sites
3' ss Seq
AATGTTTATCTCCATATCAGACA
3' ss Score
5.79
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GATGACCCAATTGGCAATCTCAACACTGCTTTTGATATTGCAGAGAAATTCCTTGACATCCCTAAAATGCTTGATGCAGATG
Seq A exon
ACATTGTGAACACTCCAAAACCTGATGAGAAGGCCATCATGACCTATGTGTCATGTTTCTACCATGCTTTTGCTGGTGCAGAGCAG
Seq C2 exon
GCTGAGACAGCAGCTAACAGGATCTGCAAAGTCCTGGCAGTGAACCAGGAAAATGAGAAGCTGATGGAAGAATACGAGAAACTGGCCAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013755-'11-11,'11-9,12-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(26.0=100)
A:
PF0030726=CH=PD(23.1=82.8)
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCCAATTGGCAATCTCAACA
R:
CGCTGGCCAGTTTCTCGTATT
Band lengths:
171-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]