RnoEX0006358 @ rn6
Exon Skipping
Gene
ENSRNOG00000019745 | Actn3
Description
actinin alpha 3 [Source:RGD Symbol;Acc:621792]
Coordinates
chr1:220128485-220129974:-
Coord C1 exon
chr1:220129893-220129974
Coord A exon
chr1:220128886-220128971
Coord C2 exon
chr1:220128485-220128577
Length
86 bp
Sequences
Splice sites
3' ss Seq
ACTTTGCTGTCTTCCCCCAGATA
3' ss Score
11.88
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GATGACCCCATTGGAAACCTGAACACTGCCTTTGAGGTGGCAGAGAAATACCTGGACATCCCTAAGATGCTGGATGCAGAAG
Seq A exon
ATATTGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCATTTGCTGGGGCTGAGCAG
Seq C2 exon
GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAACGAGAAGCTGATGGAGGAGTATGAGAAACTGGCTAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019745-'11-14,'11-13,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(26.0=100)
A:
PF0030726=CH=PD(23.1=82.8)
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCCCATTGGAAACCTGAAC
R:
AGCCAGTTTCTCATACTCCTCCA
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]