BtaEX6103727 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022244 | ACTN3
Description
actinin, alpha 3 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:165]
Coordinates
chr29:45235865-45237160:+
Coord C1 exon
chr29:45235865-45235946
Coord A exon
chr29:45236680-45236765
Coord C2 exon
chr29:45237068-45237160
Length
86 bp
Sequences
Splice sites
3' ss Seq
ACCTGGCTGCCATTCCGCAGACA
3' ss Score
8.27
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GACGACCCCATCGGCAACTTGAACACCGCCTTTGAGGTGGCCGAGAAGTACCTGGACATCCCTAAGATGCTGGATGCAGAAG
Seq A exon
ACATTGTGAACACCCCAAAGCCTGATGAGAAGGCCATCATGACCTATGTCTCCTGCTTCTACCACGCCTTTGCCGGGGCGGAGCAG
Seq C2 exon
GCAGAGACAGCTGCCAACAGGATCTGCAAAGTGCTGGCCGTGAACCAGGAGAACGAGAAGCTGATGGAGGAATATGAAAAGCTGGCCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022244-'8-10,'8-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(26.0=100)
A:
PF0030726=CH=PD(23.1=82.8)
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCCATCGGCAACTTGAAC
R:
TGGCCAGCTTTTCATATTCCTCC
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]