MmuEX6030554 @ mm10
Exon Skipping
Gene
ENSMUSG00000006457 | Actn3
Description
actinin alpha 3 [Source:MGI Symbol;Acc:MGI:99678]
Coordinates
chr19:4868718-4870993:-
Coord C1 exon
chr19:4870912-4870993
Coord A exon
chr19:4869358-4869443
Coord C2 exon
chr19:4868718-4868810
Length
86 bp
Sequences
Splice sites
3' ss Seq
ACTTTTCTGTCCTCCCCCAGATA
3' ss Score
12.26
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GATGACCCAATTGGAAACCTGAACACTGCCTTCGAGGTGGCAGAGAAATACCTGGACATTCCTAAGATGCTGGATGCAGAAG
Seq A exon
ATATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG
Seq C2 exon
GCAGAGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006457-'10-11,'10-8,12-11=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(26.0=100)
A:
PF0030726=CH=PD(23.1=82.8)
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCCAATTGGAAACCTGAACA
R:
GGCCAGTTTCTCATACTCCTCC
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types