DreEX0010976 @ danRer10
Exon Skipping
Gene
ENSDARG00000001431 | actn3b
Description
actinin alpha 3b [Source:ZFIN;Acc:ZDB-GENE-030131-2040]
Coordinates
chr7:6814866-6881924:+
Coord C1 exon
chr7:6814866-6815176
Coord A exon
chr7:6865036-6865128
Coord C2 exon
chr7:6881742-6881924
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGTTATCTCCATTTCTCTAGGCT
3' ss Score
9.23
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTGCTACTTTTGACCAGGATAGGAGCACTGGGCAGCAGAAGTTCTGCTCGCACCTCCACACCGGCACCTCAGACGAGTGGAGTCTGGCCTCTTCCTCCGCGGTCAACAGGATTTAGAGCTCTAAAGCGCACATTACTTCTAATAATAAGGGTTAGAGGGATAGGTGTGAAAAGATGACGGCTGTTGTTGAGACGCAGATGCAGTATAACAACACCTACATGATGTCTACTACGCAAGACTACATGATTCAGGAGGATGATTGGGACAGGGACCTGCTGCTGGACCCTGCCTGGGAGAAACAGCAGAGGAAG
Seq A exon
GCTGAGACGGCTGCTAACAGGATCTGCAAGGTTCTAGCTGTGAACCAGGAGAATGAACGGCTGATGGAGGAGTATGAGAAACTGGCCAGCGAG
Seq C2 exon
AGTCTGATCACAGCTCACGACCAGTTTAAAGCCACTCTTCCCGAGGCCGATAAGGAGCGAATGGCCGTGATGGGCATCCAGAACGAGATCGTGAAGATCGCTCAAACCTACGGCATCAAGCTGGTCGGAGTCAATCCATACTCAGTGCTCAGCCCACAGGACATCACCAACAAATGGGAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001431_MULTIEX1-8/15=C1-14
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.609 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(1.0=2.2)
A:
PF0043516=Spectrin=PU(9.9=35.5)
C2:
PF0043516=Spectrin=FE(53.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGAGAAACAGCAGAGGA
R:
TGTGGGCTGAGCACTGAGTAT
Band lengths:
181-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]