DreEX0011037 @ danRer10
Exon Skipping
Gene
ENSDARG00000011188 | acvr2aa
Description
activin A receptor, type IIAa [Source:ZFIN;Acc:ZDB-GENE-980526-227]
Coordinates
chr9:25582074-25597879:-
Coord C1 exon
chr9:25597725-25597879
Coord A exon
chr9:25589591-25589614
Coord C2 exon
chr9:25582074-25582217
Length
24 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCCTTCCTCAACTAGCAC
3' ss Score
7.85
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
CGACATCAAACCCCTTGACCCAGAAGCCGCCACTGTTCAGTACCCTTCTGTACTCCATCGTGCCCATCATGGGCATTGCAGCCATTGTCCTGCTCTCCTTCTGGATGTATCGGCATCACAAGTTGGCATACCCTCCTGTTCTGGTGCCTACCCAG
Seq A exon
CACGCCTTTCATATAATGATAGAG
Seq C2 exon
GACCCTGGACCAATGCCACCATCTCCCACCCTGGTCCAAAAGCCATTGCAATTGTTGGAAATCAAAGCTAGGGGGCGCTTTGGCTGTGTGTGGAAGGCTCAGCTGCTCAATGACTATGTGGCAGTGAAGATTTTCCCCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011188_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.000 C2=0.078
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0006920=Pkinase=PU(11.1=66.7)
Main Inclusion Isoform:
ENSDART00000105492fB977
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATTGTCCTGCTCTCCTTC
R:
TTTTGGACCAGGGTGGGAGAT
Band lengths:
116-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]