DreEX0013131 @ danRer10
Exon Skipping
Gene
ENSDARG00000077582 | ank3b
Description
ankyrin 3b [Source:ZFIN;Acc:ZDB-GENE-060621-2]
Coordinates
chr12:7723680-7731925:-
Coord C1 exon
chr12:7731827-7731925
Coord A exon
chr12:7731245-7731343
Coord C2 exon
chr12:7723680-7723877
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCCTCTGTGTGTGTTTTTAGAGG
3' ss Score
9.77
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TCTGGACTCACGCCGATTCATGTGGCTGCTTTTATGGGCCATGAAAACATTGTGACTCAGTTAACAAATCACGGAGCGTCTCCTAACACAATGAATGTG
Seq A exon
AGGGGAGAGACGGCGCTCCATATGGCTGCCAGGGCAGGACAGGCAAACGTGGTGAAATTCCTGGTGGCGAATGGAGCAGATGTGGACGCAAAAGCCAAG
Seq C2 exon
GACGATCAGACCCCGTTGCATATATCCAGTCGTCTGGGAAAACCAGACATTGTCCAGCAACTGCTGCAGCATGGGGCTTTACCCGACTCCACCACCACGTCTGGATACACGCCACTGCACCTGGCTGCACGGGACGGCCACAAAGACGTGGCATCCATCCTGCTGGACAACGGAGCCTCTCTTGGCATTACTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077582-'20-17,'20-16,21-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=0.242 C2=0.394
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(29.0=81.8)
A:
PF127962=Ank_2=PD(44.3=93.9)
C2:
PF127962=Ank_2=PD(33.3=47.0),PF0002325=Ank=WD(100=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCTTTTATGGGCCATGA
R:
TATCCAGACGTGGTGGTGGAG
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]